| Setting | Value |
|---|---|
| version | R version 4.3.0 (2023-04-21) |
| os | macOS 14.3.1 |
| system | x86_64, darwin20 |
| ui | X11 |
| language | (EN) |
| collate | en_US.UTF-8 |
| ctype | en_US.UTF-8 |
| tz | Europe/Amsterdam |
| date | 2024-03-07 |
| pandoc | 3.1.3 @ /usr/local/bin/ (via rmarkdown) |
About
This illustration accompanies the publication “A Gentle Introduction and Application of Feature-Based Clustering with Psychological Time Series”. The aim of this illustration website is to offer a transparent, open, and accessible repository providing annotated code for all analysis steps.
Open Data
We provide all data necessary to replicate the full results of the main manuscript as well as this illustration. We specifically provide a minial reproducible dataset that includes all variables necessary to perform the analysis, while still protecting the privacy and confidentiality of the participants. All data is available as part of our Open Science repository (Masked for Peer Review, 2023a).
Open Code
The full code of this illustration as well as the main manuscript is available as part of our GitHub repository (Masked for Peer Review, 2023b). A minimal version of the code as well as an archive file are available in our Open Science repository (Masked for Peer Review, 2023a). For convenience purposes, we have also collected a number of functions we created as part of the illustration as an R-package. This package is available as its own GitHub repository and can be downloaded with the devtools package devtools::install_github("JannisCodes/tsFeatureExtracR"), you can also download the R package here (Masked for Peer Review, 2023c).
Software Information
The full session information with all relevant system information and all loaded and installed packages is available in the collapsible section below.
System Info
Package Info
| Package | Loaded version | Date | Source |
|---|---|---|---|
| bibtex | 0.5.1 | 2023-01-26 | CRAN (R 4.3.0) |
| devtools | 2.4.5 | 2022-10-11 | CRAN (R 4.3.0) |
| dplyr | 1.1.4 | 2023-11-17 | CRAN (R 4.3.0) |
| factoextra | 1.0.7 | 2020-04-01 | CRAN (R 4.3.0) |
| forcats | 1.0.0 | 2023-01-29 | CRAN (R 4.3.0) |
| fpc | 2.2-10 | 2023-01-07 | CRAN (R 4.3.0) |
| ggplot2 | 3.5.0 | 2024-02-23 | CRAN (R 4.3.2) |
| grateful | 0.2.0 | 2023-04-24 | CRAN (R 4.3.0) |
| htmltools | 0.5.7 | 2023-11-03 | CRAN (R 4.3.0) |
| kableExtra | 1.3.4 | 2021-02-20 | CRAN (R 4.3.0) |
| knitcitations | 1.0.12 | 2021-01-10 | CRAN (R 4.3.0) |
| knitr | 1.42 | 2023-01-25 | CRAN (R 4.3.0) |
| lubridate | 1.9.2 | 2023-02-10 | CRAN (R 4.3.0) |
| NbClust | 3.0.1 | 2022-05-02 | CRAN (R 4.3.0) |
| pander | 0.6.5 | 2022-03-18 | CRAN (R 4.3.0) |
| plotly | 4.10.4 | 2024-01-13 | CRAN (R 4.3.0) |
| purrr | 1.0.2 | 2023-08-10 | CRAN (R 4.3.0) |
| readr | 2.1.5 | 2024-01-10 | CRAN (R 4.3.0) |
| readxl | 1.4.2 | 2023-02-09 | CRAN (R 4.3.0) |
| reshape | 0.8.9 | 2022-04-12 | CRAN (R 4.3.0) |
| rmarkdown | 2.23 | 2023-07-01 | CRAN (R 4.3.0) |
| stringr | 1.5.1 | 2023-11-14 | CRAN (R 4.3.0) |
| tibble | 3.2.1 | 2023-03-20 | CRAN (R 4.3.0) |
| tidyr | 1.3.1 | 2024-01-24 | CRAN (R 4.3.2) |
| tidyverse | 2.0.0 | 2023-02-22 | CRAN (R 4.3.0) |
| tsFeatureExtracR | 0.1.0 | 2024-03-01 | Github (JannisCodes/tsFeatureExtracR@2a8fa5f1cb87350e3c439335c9620d185f00b03b) |
| usethis | 2.2.2 | 2023-07-06 | CRAN (R 4.3.0) |
Full Session Info (including loaded but unattached packages — for troubleshooting only)
R version 4.3.0 (2023-04-21)
Platform: x86_64-apple-darwin20 (64-bit)
locale: en_US.UTF-8||en_US.UTF-8||en_US.UTF-8||C||en_US.UTF-8||en_US.UTF-8
attached base packages:
- stats
- graphics
- grDevices
- utils
- datasets
- methods
- base
other attached packages:
- bibtex(v.0.5.1)
- grateful(v.0.2.0)
- knitcitations(v.1.0.12)
- pander(v.0.6.5)
- devtools(v.2.4.5)
- usethis(v.2.2.2)
- NbClust(v.3.0.1)
- htmltools(v.0.5.7)
- plotly(v.4.10.4)
- reshape(v.0.8.9)
- readxl(v.1.4.2)
- fpc(v.2.2-10)
- factoextra(v.1.0.7)
- tsFeatureExtracR(v.0.1.0)
- kableExtra(v.1.3.4)
- lubridate(v.1.9.2)
- forcats(v.1.0.0)
- stringr(v.1.5.1)
- dplyr(v.1.1.4)
- purrr(v.1.0.2)
- readr(v.2.1.5)
- tidyr(v.1.3.1)
- tibble(v.3.2.1)
- ggplot2(v.3.5.0)
- tidyverse(v.2.0.0)
- knitr(v.1.42)
- rmarkdown(v.2.23)
loaded via a namespace (and not attached):
- rstudioapi(v.0.14)
- jsonlite(v.1.8.8)
- shape(v.1.4.6.1)
- magrittr(v.2.0.3)
- jomo(v.2.7-6)
- modeltools(v.0.2-23)
- nloptr(v.2.0.3)
- fs(v.1.6.3)
- vctrs(v.0.6.5)
- RefManageR(v.1.4.0)
- memoise(v.2.0.1)
- minqa(v.1.2.6)
- webshot(v.0.5.4)
- broom(v.1.0.5)
- cellranger(v.1.1.0)
- mitml(v.0.4-5)
- htmlwidgets(v.1.6.2)
- plyr(v.1.8.8)
- cachem(v.1.0.8)
- mime(v.0.12)
- lifecycle(v.1.0.4)
- iterators(v.1.0.14)
- pkgconfig(v.2.0.3)
- Matrix(v.1.6-5)
- R6(v.2.5.1)
- fastmap(v.1.1.1)
- shiny(v.1.8.0)
- digest(v.0.6.34)
- colorspace(v.2.1-0)
- pkgload(v.1.3.4)
- fansi(v.1.0.6)
- timechange(v.0.2.0)
- httr(v.1.4.6)
- mgcv(v.1.8-42)
- compiler(v.4.3.0)
- remotes(v.2.4.2)
- withr(v.3.0.0)
- backports(v.1.4.1)
- psych(v.2.4.1)
- highr(v.0.10)
- pkgbuild(v.1.4.3)
- pan(v.1.9)
- MASS(v.7.3-58.4)
- sessioninfo(v.1.2.2)
- tools(v.4.3.0)
- prabclus(v.2.3-2)
- httpuv(v.1.6.11)
- nnet(v.7.3-18)
- glue(v.1.7.0)
- nlme(v.3.1-162)
- promises(v.1.2.0.1)
- grid(v.4.3.0)
- cluster(v.2.1.6)
- generics(v.0.1.3)
- gtable(v.0.3.4)
- tzdb(v.0.4.0)
- class(v.7.3-21)
- data.table(v.1.14.8)
- hms(v.1.1.3)
- xml2(v.1.3.4)
- utf8(v.1.2.4)
- flexmix(v.2.3-19)
- ggrepel(v.0.9.3)
- foreach(v.1.5.2)
- pillar(v.1.9.0)
- later(v.1.3.1)
- robustbase(v.0.99-0)
- splines(v.4.3.0)
- lattice(v.0.21-8)
- survival(v.3.5-5)
- tidyselect(v.1.2.0)
- miniUI(v.0.1.1.1)
- svglite(v.2.1.1)
- stats4(v.4.3.0)
- xfun(v.0.39)
- diptest(v.0.76-0)
- DEoptimR(v.1.0-14)
- stringi(v.1.8.3)
- lazyeval(v.0.2.2)
- yaml(v.2.3.7)
- boot(v.1.3-28.1)
- evaluate(v.0.23)
- codetools(v.0.2-19)
- kernlab(v.0.9-32)
- cli(v.3.6.2)
- rpart(v.4.1.19)
- xtable(v.1.8-4)
- systemfonts(v.1.0.4)
- munsell(v.0.5.0)
- Rcpp(v.1.0.12)
- parallel(v.4.3.0)
- ellipsis(v.0.3.2)
- mclust(v.6.0.0)
- profvis(v.0.3.8)
- urlchecker(v.1.0.1)
- lme4(v.1.1-35.1)
- glmnet(v.4.1-8)
- viridisLite(v.0.4.2)
- ggthemes(v.5.1.0)
- scales(v.1.3.0)
- rlang(v.1.1.3)
- rvest(v.1.0.3)
- mnormt(v.2.1.1)
- mice(v.3.16.0)
References
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